Reference entry
Fermentation
Plain-English definitions of microbiome research vocabulary — the terms you'll see across articles, testing services, and probiotic claims.
Glossary context
Defined
in the site-wide microbiome glossary
Definition
The metabolic process by which bacteria break down substrates (such as dietary fibre) in the absence of oxygen. In the gut, fermentation of fibre produces short-chain fatty acids, gases, and other metabolites essential for colon health.
Related terms
Short-Chain Fatty Acids (SCFAs)
Metabolites produced when gut bacteria ferment dietary fibre. The three main SCFAs — butyrate, propionate, and acetate — are critical for colon health, immune regulation, and energy metabolism.
Prebiotic
Non-digestible food components (typically dietary fibres) that selectively stimulate the growth or activity of beneficial gut bacteria. Common examples include inulin, FOS, and GOS.